catalog




CFTR-NGS variants catalogue


Variant hg19:chr7:117265255T/C


CFTR-NGS Variant details:
Name NM_000492.4:c.3469-2321T>C
Protein name NP_000483.3:p.(?)
Genomic name (hg19) chr7:g.117265255T>C    UCSC    gnomAD
#Exon/intron intron 21
Type in CFTR-NGS catalogue -
Class in CFTR-France not reported
WT sequence AGATTAAATCACACGTTCTTGGCTA T GCATATTTGGGCATGCTGTGGGGAG
Mutant sequence AGATTAAATCACACGTTCTTGGCTA C GCATATTTGGGCATGCTGTGGGGAG


Additional information:
MAF (GnomAD) 7.48e-02
Splicing prediction (SpliceAI) AG: 0.00 (35)
AL: 0.00 (-4)
DG: 0.00 (17)
DL: 0.00 (-47)




External sources:

Not found

Not found
dbSNP
rs28472519

Not found

Variant validation:
Sanger
(present/not present/not verified)
Minigene
(effect/no effect/not performed)
not verifiednot performed



No patient found in CFTR-France


2 individuals (out of 136) carrying this variant are reported in CFTR-NGS catalogue:

TOTAL NUMBER OF INDIVIDUALS 2
CFTR-RD1
  • CFTR-RD  1
Suspicion of CF 1



Details of NGS patients:
ID Phenotype Laboratory Experiment Variant status Variant filter Quality score Depth of coverage
9CFTR-RDMontpellier150517_varilhhomozygous PASS 10592 347
m4959Suspicion of CFMontpellier151220_Altieriheterozygous PASS 2651 268





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