catalog




CFTR-NGS variants catalogue


Variant hg19:chr7:117273390A/AT


CFTR-NGS Variant details:
Name NM_000492.4:c.3717+5574dupT
Protein name NP_000483.3:p.(=)
Genomic name (hg19) chr7:g.117273398dup    UCSC    
#Exon/intron intron 22
Type in CFTR-NGS catalogue -
Class in CFTR-France not reported
WT sequence GTTATATAGGAAAATGATTTTTTTT - GCATGTTAGCCTTATATCTTTCAAC
Mutant sequence GTTATATAGGAAAATGATTTTTTTT T GCATGTTAGCCTTATATCTTTCAAC


Additional information:
MAF (GnomAD) 6.58e-04
Splicing prediction (SpliceAI) AG: 0.00 (42)
AL: 0.00 (-7)
DG: 0.00 (12)
DL: 0.00 (-30)




External sources:

Not found

Not found
dbSNP
no rs

Not found

Variant validation:
Sanger
(present/not present/not verified)
Minigene
(effect/no effect/not performed)
not verifiednot performed



No patient found in CFTR-France


1 individual (out of 136) carrying this variant is reported in CFTR-NGS catalogue:

TOTAL NUMBER OF INDIVIDUALS 1
Suspicion of CF 1



Details of NGS patients:
ID Phenotype Laboratory Experiment Variant status Variant filter Quality score Depth of coverage
cad200419Suspicion of CFMontpellier151220_Altieriheterozygous PASS 173 22





Go to CFTRare
VLMCHUUM