CFTR-NGS variants catalogue
Variant hg19:chr7:117289680T/G
Name | NM_000492.4:c.3874-3216T>G |
Protein name | NP_000483.3:p.(=) |
Genomic name (hg19) | chr7:g.117289680T>G UCSC gnomAD |
#Exon/intron | intron 23 |
Type in CFTR-NGS catalogue | - |
Class in CFTR-France | not reported |
WT sequence | CTCTGAGTTTGATGTTTTTGTATTT T ACTTCCTATTTTCATATCAGTCCAT |
Mutant sequence | CTCTGAGTTTGATGTTTTTGTATTT G ACTTCCTATTTTCATATCAGTCCAT |
MAF (GnomAD) | 2.24e-04 |
Splicing prediction (SpliceAI) | AG: 0.00 (-48) AL: 0.00 (38) DG: 0.00 (15) DL: 0.00 (-7) |
Not found | Not found | dbSNP rs552055065 | Not found |
Sanger (present/not present/not verified) |
Minigene (effect/no effect/not performed) |
not verified | not performed |
No patient found in CFTR-France |
TOTAL NUMBER OF INDIVIDUALS | 1 |
---|---|
Suspicion of CF | 1 |
ID | Phenotype | Laboratory | Experiment | Variant status | Variant filter | Quality score | Depth of coverage |
---|---|---|---|---|---|---|---|
cad200419 | Suspicion of CF | Montpellier | 151220_Altieri | heterozygous | PASS | 352 | 23 |